Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3621412..3621563 | Replicon | chromosome |
| Accession | NZ_CP019113 | ||
| Organism | Enterobacter sp. SA187 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3621420..3621509 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3621412..3621563 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMF08_RS17280 | 3616466..3617905 | + | 1440 | WP_072568766.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BMF08_RS17285 | 3618018..3618257 | + | 240 | WP_072568767.1 | DUF1480 family protein | - |
| BMF08_RS17290 | 3618360..3618551 | + | 192 | WP_072568768.1 | YebW family protein | - |
| BMF08_RS17295 | 3618758..3619702 | + | 945 | WP_072568769.1 | VirK/YbjX family protein | - |
| BMF08_RS17300 | 3619789..3620229 | + | 441 | WP_072568770.1 | hypothetical protein | - |
| BMF08_RS17305 | 3620270..3621166 | - | 897 | WP_072568771.1 | diguanylate cyclase | - |
| - | 3621412..3621563 | + | 152 | - | - | Antitoxin |
| - | 3621420..3621509 | - | 90 | - | - | Toxin |
| BMF08_RS17310 | 3621680..3622018 | - | 339 | WP_072568772.1 | YebY family protein | - |
| BMF08_RS17315 | 3622035..3622904 | - | 870 | WP_072568773.1 | copper homeostasis membrane protein CopD | - |
| BMF08_RS17320 | 3622908..3623282 | - | 375 | WP_072568774.1 | CopC domain-containing protein YobA | - |
| BMF08_RS17325 | 3623419..3623649 | + | 231 | WP_072568775.1 | DNA polymerase III subunit theta | - |
| BMF08_RS17330 | 3623679..3624338 | + | 660 | WP_072568776.1 | exodeoxyribonuclease X | - |
| BMF08_RS17335 | 3624328..3626394 | - | 2067 | WP_072568777.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T71742 NZ_CP019113:c3621509-3621420 [Enterobacter sp. SA187]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTCG
GTCTTTTTTT
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTCG
GTCTTTTTTT
Antitoxin
Download Length: 152 bp
>AT71742 NZ_CP019113:3621412-3621563 [Enterobacter sp. SA187]
AACAGAATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCAAACTACGCCTGGCACTTTAAGAATAGATGACAGCGCCAGCTTTTCCAGTCTGC
AACAGAATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCAAACTACGCCTGGCACTTTAAGAATAGATGACAGCGCCAGCTTTTCCAGTCTGC
