71668

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 4247874..4249594 Replicon chromosome
Accession NZ_CP019062
Organism Rahnella sp. ERMR1:05

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag BV494_RS19630 Protein ID WP_104924349.1
Coordinates 4247874..4248530 (+) Length 219 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag BV494_RS19635 Protein ID WP_104924350.1
Coordinates 4248527..4249594 (+) Length 356 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BV494_RS19615 4243879..4244118 + 240 WP_104924346.1 transcription factor -
BV494_RS19620 4244158..4246605 + 2448 WP_104924347.1 type I restriction-modification system subunit M -
BV494_RS19625 4246605..4247861 + 1257 WP_104924348.1 restriction endonuclease subunit S -
BV494_RS19630 4247874..4248530 + 657 WP_104924349.1 DUF4433 domain-containing protein Toxin
BV494_RS19635 4248527..4249594 + 1068 WP_104924350.1 macro domain-containing protein Antitoxin
BV494_RS19640 4249615..4252710 + 3096 WP_104924351.1 HsdR family type I site-specific deoxyribonuclease -
BV494_RS19645 4252710..4253426 + 717 WP_104924352.1 M48 family metallopeptidase -
BV494_RS19655 4253897..4254064 - 168 WP_104924852.1 AlpA family phage regulatory protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(17-217)

Antitoxin

Macro domain

(18-129)


Sequences

Toxin        


Download         Length: 219 a.a.        Molecular weight: 25257.79 Da        Isoelectric Point: 7.5072

>T71668 WP_104924349.1 NZ_CP019062:4247874-4248530 [Rahnella sp. ERMR1:05]
MAYDYSANLNPEKALIWRIVHRDNIPWILDNGLHCGNSPVQAENWINIGNPELIDKRAGHLVPTGTGGTLHDYVPFYFTP
FSPMLMNIRSGRGGIKQRPNEEIVILVSSLRHLAAQKVPFVFTDSHAYYNLANYYTDLNNLHRIDWPILQARDFRRDQDD
LGKFERYQAEALIWKHCPITLLGGMICYNDGVRLQLEQWMSQRNLSMPVHTRAGWYFS

Download         Length: 657 bp

>T71668 NZ_CP019062:4247874-4248530 [Rahnella sp. ERMR1:05]
ATGGCTTATGACTACAGCGCTAATCTCAACCCCGAAAAAGCCCTGATCTGGCGCATTGTCCATCGGGACAATATCCCGTG
GATCCTGGACAACGGTCTGCACTGTGGCAACAGTCCGGTGCAGGCGGAAAACTGGATTAATATCGGTAACCCGGAGCTTA
TCGACAAACGTGCCGGACATCTGGTACCTACCGGAACGGGAGGGACGCTGCATGACTATGTGCCGTTTTACTTTACTCCT
TTCTCGCCAATGCTGATGAATATTCGCAGCGGGCGTGGCGGCATTAAGCAGCGCCCCAATGAGGAAATCGTCATTCTGGT
CAGCAGCCTGCGACACTTGGCGGCGCAGAAGGTCCCCTTCGTCTTTACCGACAGCCACGCCTACTATAATCTGGCAAATT
ACTATACCGATCTAAACAATCTGCATCGGATCGACTGGCCCATCTTACAAGCGCGGGATTTCCGTCGCGATCAGGACGAT
CTTGGCAAGTTTGAACGCTATCAGGCTGAGGCGTTAATCTGGAAGCACTGCCCAATCACACTGCTGGGCGGGATGATTTG
TTACAACGATGGCGTCAGGTTACAATTAGAGCAGTGGATGTCACAACGCAATCTGTCAATGCCCGTTCACACACGGGCCG
GGTGGTACTTCTCATGA

Antitoxin


Download         Length: 356 a.a.        Molecular weight: 40767.04 Da        Isoelectric Point: 5.9022

>AT71668 WP_104924350.1 NZ_CP019062:4248527-4249594 [Rahnella sp. ERMR1:05]
MIAYTQGNLLDAPVEALVNTVNTVGVMGKGIALMFKERFPDNMKAYALACKQKQVMTGKMFITETGELMGPRWIVNFPTK
QHWRADSRMEWIEDGLQDLRRFLSEEKVQSIAIPPLGAGNGGLNWPDVRARIESALGDLRDIEILIYEPTEKYQNVAKST
GVKKLTPARAMIAELVRRYWVLGMECSLLEIQKLAWLLQRAIELHQQEDVLKLRFEAHNYGPFSPNLNHLLNALDGTYLK
AEKRIPDSQPLDVIWFNDREKEHVNLWLNNEAKEWLPALEQVSQLIDGFESPFGLELLATVDWLLTRGECLPTLDSVKEG
LHQWPAGERWASRKMKLFDDNHLQFAINRVMEFHC

Download         Length: 1068 bp

>AT71668 NZ_CP019062:4248527-4249594 [Rahnella sp. ERMR1:05]
ATGATCGCATATACACAAGGCAATTTACTGGACGCGCCCGTGGAAGCACTGGTGAATACGGTTAATACCGTCGGCGTCAT
GGGTAAAGGCATCGCGCTAATGTTCAAAGAGCGCTTCCCCGATAATATGAAAGCCTATGCTCTCGCCTGCAAACAAAAGC
AGGTCATGACCGGCAAGATGTTTATTACCGAAACCGGCGAGCTGATGGGGCCGCGCTGGATCGTCAACTTCCCAACCAAG
CAGCACTGGCGCGCCGACTCCCGCATGGAGTGGATTGAAGACGGCTTGCAGGACCTACGCCGCTTTTTGAGCGAAGAGAA
AGTGCAGTCCATCGCCATTCCTCCACTGGGCGCAGGCAACGGTGGCCTGAACTGGCCGGACGTCCGGGCGCGGATTGAAT
CTGCGCTGGGCGACCTTCGGGACATAGAAATCCTGATTTATGAGCCTACCGAAAAATACCAGAACGTCGCCAAGAGCACC
GGCGTAAAAAAGCTCACACCCGCCAGAGCGATGATCGCTGAACTAGTGCGCCGCTACTGGGTGCTGGGCATGGAGTGCAG
TTTGCTGGAAATCCAGAAGCTGGCATGGCTGTTACAACGCGCTATTGAACTGCACCAGCAGGAGGACGTGCTTAAGCTGC
GCTTTGAGGCGCACAATTACGGTCCCTTCTCCCCCAACCTGAACCATCTGCTTAACGCGCTGGACGGCACCTATCTGAAA
GCCGAGAAACGCATCCCGGACAGCCAGCCGCTGGACGTGATCTGGTTTAACGATCGGGAAAAAGAACACGTCAACCTCTG
GCTGAACAACGAGGCCAAAGAGTGGCTACCGGCGCTTGAGCAGGTCAGCCAGTTGATTGACGGCTTTGAATCGCCGTTTG
GTCTGGAGCTGCTGGCGACCGTTGACTGGCTGCTGACCCGAGGAGAATGCCTGCCCACGCTGGATTCCGTGAAAGAGGGG
CTGCACCAATGGCCTGCGGGTGAACGCTGGGCCAGCCGTAAGATGAAGCTGTTTGATGATAATCATCTTCAATTCGCCAT
AAACCGCGTGATGGAGTTCCATTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References