Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2056035..2056132 | Replicon | chromosome |
| Accession | NZ_CP019062 | ||
| Organism | Rahnella sp. ERMR1:05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2056042..2056132 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2056035..2056132 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV494_RS09345 | 2052232..2052453 | + | 222 | WP_013573939.1 | DNA-binding transcriptional regulator | - |
| BV494_RS09350 | 2052495..2052860 | - | 366 | WP_104922628.1 | hypothetical protein | - |
| BV494_RS09355 | 2053070..2054113 | + | 1044 | WP_104922629.1 | tyrosine-type recombinase/integrase | - |
| BV494_RS09360 | 2054260..2055264 | - | 1005 | WP_104924763.1 | HNH endonuclease | - |
| BV494_RS09370 | 2055758..2055973 | + | 216 | Protein_1840 | tyrosine-type recombinase/integrase | - |
| - | 2056035..2056132 | + | 98 | - | - | Antitoxin |
| - | 2056042..2056132 | - | 91 | - | - | Toxin |
| BV494_RS09375 | 2056288..2056623 | - | 336 | WP_104922630.1 | YebY family protein | - |
| BV494_RS09380 | 2056661..2057545 | - | 885 | WP_104922631.1 | copper homeostasis membrane protein CopD | - |
| BV494_RS09385 | 2057549..2057932 | - | 384 | WP_104922632.1 | CopC domain-containing protein YobA | - |
| BV494_RS09390 | 2058075..2058581 | - | 507 | WP_104922633.1 | non-heme ferritin | - |
| BV494_RS09395 | 2058990..2059220 | + | 231 | WP_104922634.1 | DNA polymerase III subunit theta | - |
| BV494_RS09400 | 2059258..2060214 | - | 957 | WP_104922635.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2023179..2059220 | 36041 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T71657 NZ_CP019062:c2056132-2056042 [Rahnella sp. ERMR1:05]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCATTTTTTT
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCATTTTTTT
Antitoxin
Download Length: 98 bp
>AT71657 NZ_CP019062:2056035-2056132 [Rahnella sp. ERMR1:05]
AACAGTCAAAAAAATGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGC
AACAGTCAAAAAAATGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGC
