Detailed information of TA system TA071655

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /RES-TIGR02293
• Location: 504450..505366
• Replicon: chromosome
• Accession: NZ_CP019062
• Organism: Rahnella sp. ERMR1:05

Toxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: BV494_RS02300
• Protein ID: WP_104921389.1
• Coordinates: 504450..504908 (-)
• Length: 153 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: BV494_RS02305
• Protein ID: WP_104921390.1
• Coordinates: 504905..505366 (-)
• Length: 154 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BV494_RS02275	500384..501259	+	876	WP_104921385.1	alpha/beta hydrolase	-
BV494_RS02280	501407..501865	+	459	WP_104921386.1	GNAT family N-acetyltransferase	-
BV494_RS02285	502474..503403	-	930	WP_104921387.1	LysR family transcriptional regulator	-
BV494_RS02290	503521..503955	+	435	WP_104921388.1	DMT family transporter	-
BV494_RS02295	503959..504411	+	453	WP_101075994.1	DMT family transporter	-
BV494_RS02300	504450..504908	-	459	WP_104921389.1	RES domain-containing protein	Toxin
BV494_RS02305	504905..505366	-	462	WP_104921390.1	DUF2384 domain-containing protein	Antitoxin
BV494_RS02310	505718..506605	+	888	WP_104921391.1	nucleoside-specific channel-forming protein Tsx	-
BV494_RS02315	506793..508388	+	1596	WP_104921392.1	ABC-F family ATPase	-
BV494_RS02325	508735..509622	+	888	WP_104921393.1	hypothetical protein	-
BV494_RS02330	509624..510079	+	456	WP_104921394.1	DUF1240 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• RES domain (2-138)

Antitoxin

• Antitoxin Xre-like, helix-turn-helix domain (35-95)

Sequences

Toxin

Protein

• Length: 153 a.a.
• Molecular weight: 17087.54 Da
• Isoelectric Point: 4.5562

>T71655 WP_104921389.1 NZ_CP019062:c504908-504450 [Rahnella sp. ERMR1:05]
MKLFRIVQTQHLATAWSGAGAQIYGGRWNPPGRPVVYLTTSISLAILEILVHLQNSMLMRSYTLLSIEVPESLLDTLEVN
ELAADWRSPSPPDSTQRQGEAWLAEGEYVGLRVPSVIVPTEYNVLLNPQHPDFAQLLDSVERESMMFDPRLQ

Nucleotide

• Length: 459 bp

>T71655 NZ_CP019062:c504908-504450 [Rahnella sp. ERMR1:05]
TTGAAGCTGTTTCGTATTGTTCAGACACAACATTTAGCCACCGCCTGGTCGGGTGCCGGTGCCCAGATTTACGGTGGCCG
GTGGAACCCGCCCGGCAGGCCGGTAGTGTATCTGACCACCAGCATTTCGCTGGCGATTCTGGAAATTCTGGTGCATTTGC
AAAACAGCATGCTGATGCGCTCATATACGCTGCTCAGTATTGAGGTGCCGGAATCGCTGCTCGACACATTGGAAGTCAAC
GAACTGGCGGCCGACTGGCGCAGCCCTTCTCCGCCGGACAGCACGCAGCGTCAGGGTGAAGCGTGGCTGGCTGAAGGTGA
ATACGTCGGGCTGAGGGTTCCGTCGGTCATTGTCCCGACGGAATATAATGTGCTGCTCAATCCGCAACATCCGGATTTCG
CGCAGTTGCTGGATTCCGTAGAGCGCGAGTCCATGATGTTCGACCCGCGTCTGCAATAA

Antitoxin

Protein

• Length: 154 a.a.
• Molecular weight: 16481.88 Da
• Isoelectric Point: 9.8569

>AT71655 WP_104921390.1 NZ_CP019062:c505366-504905 [Rahnella sp. ERMR1:05]
MSSKITGLSSSQMKQPATPLWESAGLPAGSGVSLLNAIQKGFPVDSINRLNTELGWPKMVLLEIMGINERNYARRKAGNG
LLKSDESERVARLVRTIDAATDLFEGDRVSALDWITRPAPALAGSRPLELLSSEAGAVEVNRLIGRLQHGVFS

Nucleotide

• Length: 462 bp

>AT71655 NZ_CP019062:c505366-504905 [Rahnella sp. ERMR1:05]
ATGAGTTCAAAAATTACCGGGCTGTCTTCCAGCCAAATGAAACAACCTGCAACGCCGCTGTGGGAATCTGCGGGGCTTCC
CGCAGGCAGCGGAGTCAGTTTGCTAAATGCCATACAGAAAGGTTTTCCGGTTGATAGTATCAACCGCCTGAACACAGAGC
TGGGGTGGCCGAAAATGGTTTTGCTGGAAATAATGGGAATTAACGAGCGCAATTATGCGCGGCGTAAAGCGGGAAACGGG
TTGCTGAAAAGCGATGAAAGTGAGCGCGTGGCGCGTCTGGTTCGCACGATTGATGCGGCTACGGATCTGTTTGAAGGTGA
CCGTGTTTCAGCGCTGGACTGGATCACCCGCCCGGCCCCGGCGCTGGCCGGGTCAAGACCGCTGGAGCTGTTATCGTCTG
AAGCAGGCGCGGTGGAAGTGAACCGGCTGATTGGCCGTCTTCAGCACGGGGTATTCAGTTGA