Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3562500..3562771 | Replicon | chromosome |
| Accession | NZ_CP019051 | ||
| Organism | Escherichia coli strain CRE1540 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3562630..3562733 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3562500..3562771 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVL39_RS18375 | 3559055..3559717 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BVL39_RS18380 | 3559741..3560397 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BVL39_RS18385 | 3560499..3560729 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BVL39_RS18390 | 3560868..3561242 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BVL39_RS18395 | 3561246..3562118 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| BVL39_RS18400 | 3562131..3562472 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3562500..3562771 | - | 272 | - | - | Antitoxin |
| - | 3562630..3562733 | + | 104 | - | - | Toxin |
| BVL39_RS18405 | 3562868..3563524 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| BVL39_RS18410 | 3563525..3563716 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BVL39_RS18415 | 3563821..3564057 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BVL39_RS18420 | 3564175..3565614 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T71624 NZ_CP019051:3562630-3562733 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT71624 NZ_CP019051:c3562771-3562500 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
