Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 330416..330687 Replicon chromosome
Accession NZ_CP019029
Organism Escherichia coli strain Ecol_881

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 330546..330649 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 330416..330687 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BE930_RS04045 326971..327633 - 663 WP_000944256.1 exodeoxyribonuclease X -
BE930_RS04050 327657..328313 - 657 WP_000011651.1 carbon-nitrogen hydrolase family protein -
BE930_RS04055 328415..328645 - 231 WP_000916763.1 DNA polymerase III subunit theta -
BE930_RS04060 328784..329158 + 375 WP_022645803.1 CopC domain-containing protein YobA -
BE930_RS04065 329162..330034 + 873 WP_022645802.1 copper homeostasis membrane protein CopD -
BE930_RS04070 330047..330388 + 342 WP_000976472.1 YebY family protein -
- 330416..330687 - 272 - - Antitoxin
- 330546..330649 + 104 - - Toxin
BE930_RS04080 330784..331440 + 657 WP_022645801.1 protein-serine/threonine phosphatase -
BE930_RS04085 331441..331632 - 192 WP_001296140.1 YebW family protein -
BE930_RS04090 331737..331973 - 237 WP_001295499.1 DUF1480 family protein -
BE930_RS04095 332091..333530 - 1440 WP_024181822.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T71542 NZ_CP019029:330546-330649 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT71542 NZ_CP019029:c330687-330416 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References