Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1634526..1634794 | Replicon | chromosome |
| Accession | NZ_CP019020 | ||
| Organism | Escherichia coli strain Ecol_244 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1634654..1634756 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1634526..1634794 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE937_RS11050 | 1631079..1631741 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BE937_RS11055 | 1631765..1632421 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| BE937_RS11060 | 1632523..1632753 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE937_RS11065 | 1632892..1633266 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BE937_RS11070 | 1633270..1634142 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| BE937_RS11075 | 1634155..1634496 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1634526..1634794 | - | 269 | - | - | Antitoxin |
| - | 1634654..1634756 | + | 103 | - | - | Toxin |
| BE937_RS11085 | 1634891..1635547 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| BE937_RS11090 | 1635548..1635739 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BE937_RS11095 | 1635844..1636080 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE937_RS11100 | 1636197..1637636 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71515 NZ_CP019020:1634654-1634756 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71515 NZ_CP019020:c1634794-1634526 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
