Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4095075..4095343 | Replicon | chromosome |
| Accession | NZ_CP019015 | ||
| Organism | Escherichia coli strain Ecol_AZ162 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4095203..4095305 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4095075..4095343 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE965_RS22405 | 4091628..4092290 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BE965_RS22410 | 4092314..4092970 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| BE965_RS22415 | 4093072..4093302 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE965_RS22420 | 4093441..4093815 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BE965_RS22425 | 4093819..4094691 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| BE965_RS22430 | 4094704..4095045 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4095075..4095343 | - | 269 | - | - | Antitoxin |
| - | 4095203..4095305 | + | 103 | - | - | Toxin |
| BE965_RS22440 | 4095440..4096096 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| BE965_RS22445 | 4096097..4096288 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BE965_RS22450 | 4096393..4096629 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE965_RS22455 | 4096746..4098185 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71485 NZ_CP019015:4095203-4095305 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71485 NZ_CP019015:c4095343-4095075 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
