Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4429373..4429641 | Replicon | chromosome |
| Accession | NZ_CP019012 | ||
| Organism | Escherichia coli strain Ecol_AZ161 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4429501..4429603 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4429373..4429641 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE946_RS24435 | 4425926..4426588 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BE946_RS24440 | 4426612..4427268 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| BE946_RS24445 | 4427370..4427600 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE946_RS24450 | 4427739..4428113 | + | 375 | WP_078177588.1 | CopC domain-containing protein YobA | - |
| BE946_RS24455 | 4428117..4428989 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| BE946_RS24460 | 4429002..4429343 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4429373..4429641 | - | 269 | - | - | Antitoxin |
| - | 4429501..4429603 | + | 103 | - | - | Toxin |
| BE946_RS24470 | 4429738..4430394 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| BE946_RS24475 | 4430395..4430586 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BE946_RS24480 | 4430691..4430927 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE946_RS24485 | 4431044..4432483 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71450 NZ_CP019012:4429501-4429603 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71450 NZ_CP019012:c4429641-4429373 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
