Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-Phd
Location 96294..96895 Replicon plasmid pECAZ161_3
Accession NZ_CP019009
Organism Escherichia coli strain Ecol_AZ161

Toxin (Protein)


Gene name doc Uniprot ID V0AJ64
Locus tag BE946_RS00645 Protein ID WP_001216034.1
Coordinates 96515..96895 (+) Length 127 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID U9YQH9
Locus tag BE946_RS00640 Protein ID WP_001190712.1
Coordinates 96294..96515 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BE946_RS00630 93275..94558 - 1284 WP_001617890.1 restriction endonuclease subunit S -
BE946_RS00635 94555..96111 - 1557 WP_001617892.1 type I restriction-modification system subunit M -
BE946_RS00640 96294..96515 + 222 WP_001190712.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
BE946_RS00645 96515..96895 + 381 WP_001216034.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
BE946_RS00650 96900..97079 + 180 WP_001513661.1 hypothetical protein -
BE946_RS00655 97107..97466 + 360 WP_001513660.1 hypothetical protein -
BE946_RS00660 97390..97803 + 414 Protein_115 DDE-type integrase/transposase/recombinase -
BE946_RS00665 97753..98070 - 318 WP_001513659.1 hypothetical protein -
BE946_RS00670 98298..99278 - 981 WP_000019407.1 IS5-like element IS5 family transposase -
BE946_RS00675 99522..100925 + 1404 WP_001373486.1 S-methylmethionine permease -
BE946_RS00680 100912..101844 + 933 WP_000081352.1 homocysteine S-methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid aph(3'')-Ib / aph(6)-Id / tet(A) / aac(3)-IId / blaTEM-1B / dfrA17 / aadA5 / qacE / sul1 / mph(A) / sul2 - 1..130905 130905


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(2-123)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-51)


Sequences

Toxin        


Download         Length: 127 a.a.        Molecular weight: 13615.32 Da        Isoelectric Point: 5.1514

>T71432 WP_001216034.1 NZ_CP019009:96515-96895 [Escherichia coli]
MRHISPEELIALHDANINRYGGLPGMSDPGRAEAIIGRVQARVAYEEITDLFEVSATYLVATARGHIFNDANKRTALNSA
LLFLRRNGVQVFDSPELADLTVGAATGEISVSSVADTLRRLYGSAE

Download         Length: 381 bp

>T71432 NZ_CP019009:96515-96895 [Escherichia coli]
ATGAGGCATATATCACCGGAAGAACTTATTGCGCTTCATGATGCGAATATAAACCGCTACGGCGGCCTGCCGGGAATGTC
TGATCCGGGCAGGGCAGAGGCCATTATCGGGAGAGTTCAGGCCAGAGTTGCCTACGAAGAGATCACCGACCTTTTCGAAG
TCTCCGCCACCTACCTGGTGGCTACAGCGAGAGGGCATATATTCAATGATGCCAATAAGCGTACCGCGCTAAACAGTGCG
CTGTTATTTCTACGCCGTAACGGGGTGCAGGTATTTGATTCACCTGAACTGGCAGACCTTACCGTAGGGGCTGCGACCGG
AGAGATATCTGTATCTTCTGTCGCCGACACGTTACGTAGATTGTATGGTTCTGCGGAGTAG

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8133.10 Da        Isoelectric Point: 4.7708

>AT71432 WP_001190712.1 NZ_CP019009:96294-96515 [Escherichia coli]
MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAEFASLFDTLDSTNKELVNR

Download         Length: 222 bp

>AT71432 NZ_CP019009:96294-96515 [Escherichia coli]
ATGCAATCCATTAACTTCCGTACCGCGCGCGGCAACCTTTCTGAAGTGCTCAACAATGTTGAGGCCGGGGAAGAGGTTGA
AATCACCCGCAGAGGCCGTGAGCCAGCAGTAATTGTCAGCAAGGCTACTTTCGAAGCCTACAAAAAAGCGGCGCTGGATG
CTGAATTTGCATCCCTGTTTGACACCCTGGACTCCACCAACAAGGAACTGGTTAACCGATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V0AJ64

Antitoxin

Source ID Structure
AlphaFold DB A0A829CJB6

References