Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2352998..2353266 | Replicon | chromosome |
| Accession | NZ_CP019008 | ||
| Organism | Escherichia coli strain Ecol_AZ159 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2353126..2353228 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2352998..2353266 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE939_RS12980 | 2349551..2350213 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BE939_RS12985 | 2350237..2350893 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| BE939_RS12990 | 2350995..2351225 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE939_RS12995 | 2351364..2351738 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BE939_RS13000 | 2351742..2352614 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| BE939_RS13005 | 2352627..2352968 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2352998..2353266 | - | 269 | - | - | Antitoxin |
| - | 2353126..2353228 | + | 103 | - | - | Toxin |
| BE939_RS13015 | 2353363..2354019 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| BE939_RS13020 | 2354020..2354211 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BE939_RS13025 | 2354316..2354552 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE939_RS13030 | 2354669..2356108 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71407 NZ_CP019008:2353126-2353228 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71407 NZ_CP019008:c2353266-2352998 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
