Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3287198..3287469 | Replicon | chromosome |
| Accession | NZ_CP019005 | ||
| Organism | Escherichia coli strain Ecol_AZ155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3287236..3287339 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3287198..3287469 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE948_RS19540 | 3284355..3285794 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BE948_RS19545 | 3285912..3286148 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE948_RS19550 | 3286253..3286444 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BE948_RS19555 | 3286445..3287101 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3287198..3287469 | + | 272 | - | - | Antitoxin |
| - | 3287236..3287339 | - | 104 | - | - | Toxin |
| BE948_RS19560 | 3287497..3287838 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BE948_RS19565 | 3287851..3288723 | - | 873 | WP_046464082.1 | copper homeostasis membrane protein CopD | - |
| BE948_RS19570 | 3288727..3289101 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BE948_RS19575 | 3289240..3289470 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE948_RS19580 | 3289572..3290228 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BE948_RS19585 | 3290252..3290914 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3270581..3292971 | 22390 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T71379 NZ_CP019005:c3287339-3287236 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT71379 NZ_CP019005:3287198-3287469 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
