Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1026758..1027026 | Replicon | chromosome |
| Accession | NZ_CP019000 | ||
| Organism | Escherichia coli strain Ecol_AZ153 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1026796..1026898 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1026758..1027026 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE940_RS07525 | 1023916..1025355 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BE940_RS07530 | 1025472..1025708 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE940_RS07535 | 1025813..1026004 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BE940_RS07540 | 1026005..1026661 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1026758..1027026 | + | 269 | - | - | Antitoxin |
| - | 1026796..1026898 | - | 103 | - | - | Toxin |
| BE940_RS07550 | 1027056..1027397 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BE940_RS07555 | 1027410..1028282 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| BE940_RS07560 | 1028286..1028660 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BE940_RS07565 | 1028799..1029029 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE940_RS07570 | 1029131..1029787 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| BE940_RS07575 | 1029811..1030473 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71336 NZ_CP019000:c1026898-1026796 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71336 NZ_CP019000:1026758-1027026 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
