Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4935978..4936246 | Replicon | chromosome |
| Accession | NZ_CP018979 | ||
| Organism | Escherichia coli strain Ecol_656 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4936016..4936118 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4935978..4936246 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE941_RS26625 | 4933136..4934575 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BE941_RS26630 | 4934692..4934928 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE941_RS26635 | 4935033..4935224 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BE941_RS26640 | 4935225..4935881 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 4935978..4936246 | + | 269 | - | - | Antitoxin |
| - | 4936016..4936118 | - | 103 | - | - | Toxin |
| BE941_RS26650 | 4936276..4936617 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BE941_RS26655 | 4936630..4937502 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| BE941_RS26660 | 4937506..4937880 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BE941_RS26665 | 4938019..4938249 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE941_RS26670 | 4938351..4939007 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| BE941_RS26675 | 4939031..4939693 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71208 NZ_CP018979:c4936118-4936016 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71208 NZ_CP018979:4935978-4936246 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
