Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1477138..1477406 Replicon chromosome
Accession NZ_CP018970
Organism Escherichia coli strain Ecol_542

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1477176..1477278 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1477138..1477406 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BE966_RS09010 1474296..1475735 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
BE966_RS09015 1475852..1476088 + 237 WP_001295499.1 DUF1480 family protein -
BE966_RS09020 1476193..1476384 + 192 WP_001296140.1 YebW family protein -
BE966_RS09025 1476385..1477041 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 1477138..1477406 + 269 - - Antitoxin
- 1477176..1477278 - 103 - - Toxin
BE966_RS09035 1477436..1477777 - 342 WP_000976472.1 YebY family protein -
BE966_RS09040 1477790..1478662 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
BE966_RS09045 1478666..1479040 - 375 WP_000168747.1 CopC domain-containing protein YobA -
BE966_RS09050 1479179..1479409 + 231 WP_000916763.1 DNA polymerase III subunit theta -
BE966_RS09055 1479511..1480167 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
BE966_RS09060 1480191..1480853 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T71118 NZ_CP018970:c1477278-1477176 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT71118 NZ_CP018970:1477138-1477406 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References