Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4180633..4180904 | Replicon | chromosome |
| Accession | NZ_CP018957 | ||
| Organism | Escherichia coli strain Ecol_316 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4180671..4180774 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4180633..4180904 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE963_RS24140 | 4177790..4179229 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BE963_RS24145 | 4179347..4179583 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE963_RS24150 | 4179688..4179879 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BE963_RS24155 | 4179880..4180536 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 4180633..4180904 | + | 272 | - | - | Antitoxin |
| - | 4180671..4180774 | - | 104 | - | - | Toxin |
| BE963_RS24165 | 4180932..4181273 | - | 342 | WP_000976481.1 | YebY family protein | - |
| BE963_RS24170 | 4181286..4182158 | - | 873 | WP_001587145.1 | copper homeostasis membrane protein CopD | - |
| BE963_RS24175 | 4182162..4182536 | - | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| BE963_RS24180 | 4182675..4182905 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE963_RS24185 | 4183007..4183663 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| BE963_RS24190 | 4183687..4184349 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4164794..4204691 | 39897 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T71070 NZ_CP018957:c4180774-4180671 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT71070 NZ_CP018957:4180633-4180904 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
