Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2248559..2248830 | Replicon | chromosome |
| Accession | NZ_CP018948 | ||
| Organism | Escherichia coli strain Ecol_224 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2248689..2248792 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2248559..2248830 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE957_RS13865 | 2245114..2245776 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BE957_RS13870 | 2245800..2246456 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| BE957_RS13875 | 2246558..2246788 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BE957_RS13880 | 2246927..2247301 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BE957_RS13885 | 2247305..2248177 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| BE957_RS13890 | 2248190..2248531 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2248559..2248830 | - | 272 | - | - | Antitoxin |
| - | 2248689..2248792 | + | 104 | - | - | Toxin |
| BE957_RS13895 | 2248927..2249583 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| BE957_RS13900 | 2249584..2249775 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BE957_RS13905 | 2249880..2250116 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BE957_RS13910 | 2250234..2251673 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T70980 NZ_CP018948:2248689-2248792 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT70980 NZ_CP018948:c2248830-2248559 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
