Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1318211..1318351 | Replicon | chromosome |
| Accession | NZ_CP018925 | ||
| Organism | Serratia marcescens strain UMH3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1318255..1318351 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1318211..1318351 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVG91_RS06325 | 1313412..1313837 | + | 426 | WP_089187084.1 | RNA polymerase-binding protein DksA | - |
| BVG91_RS06330 | 1314030..1314983 | + | 954 | WP_089187085.1 | prolyl aminopeptidase | - |
| BVG91_RS06335 | 1315015..1315245 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| BVG91_RS06340 | 1315591..1316109 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| BVG91_RS06345 | 1316402..1316818 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| BVG91_RS06350 | 1316821..1317702 | + | 882 | WP_060428500.1 | copper homeostasis membrane protein CopD | - |
| BVG91_RS06355 | 1317772..1318113 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1318211..1318351 | - | 141 | - | - | Antitoxin |
| - | 1318255..1318351 | + | 97 | - | - | Toxin |
| BVG91_RS06360 | 1318397..1319485 | - | 1089 | WP_089187086.1 | tyrosine-type recombinase/integrase | - |
| BVG91_RS06365 | 1319604..1319822 | - | 219 | WP_071844562.1 | ogr/Delta-like zinc finger family protein | - |
| BVG91_RS06370 | 1319896..1320993 | - | 1098 | WP_089187087.1 | phage late control D family protein | - |
| BVG91_RS06375 | 1320990..1321454 | - | 465 | WP_089187088.1 | phage tail protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1312320..1358491 | 46171 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T70868 NZ_CP018925:1318255-1318351 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT70868 NZ_CP018925:c1318351-1318211 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
