Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1387383..1387523 | Replicon | chromosome |
| Accession | NZ_CP018917 | ||
| Organism | Serratia marcescens strain UMH5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1387427..1387523 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1387383..1387523 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVG97_RS06685 | 1382582..1383007 | + | 426 | WP_049270193.1 | RNA polymerase-binding protein DksA | - |
| BVG97_RS06690 | 1383202..1384155 | + | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| BVG97_RS06695 | 1384188..1384418 | - | 231 | WP_070914783.1 | DNA polymerase III subunit theta | - |
| BVG97_RS06700 | 1384763..1385281 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| BVG97_RS06705 | 1385574..1385990 | + | 417 | WP_084826391.1 | CopC domain-containing protein YobA | - |
| BVG97_RS06710 | 1385993..1386874 | + | 882 | WP_089185806.1 | copper homeostasis membrane protein CopD | - |
| BVG97_RS06715 | 1386944..1387285 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1387383..1387523 | - | 141 | - | - | Antitoxin |
| - | 1387427..1387523 | + | 97 | - | - | Toxin |
| BVG97_RS06720 | 1387602..1388684 | - | 1083 | WP_089185807.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| BVG97_RS06725 | 1388659..1388922 | - | 264 | WP_161727346.1 | excisionase | - |
| BVG97_RS06730 | 1389007..1390074 | - | 1068 | WP_089185808.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB | 1386944..1434517 | 47573 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T70828 NZ_CP018917:1387427-1387523 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT70828 NZ_CP018917:c1387523-1387383 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
