Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1300406..1300546 | Replicon | chromosome |
| Accession | NZ_CP018915 | ||
| Organism | Serratia marcescens strain UMH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1300450..1300546 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1300406..1300546 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVG95_RS06260 | 1295676..1296071 | + | 396 | WP_089195768.1 | RidA family protein | - |
| BVG95_RS06265 | 1296228..1297181 | + | 954 | WP_049209433.1 | prolyl aminopeptidase | - |
| BVG95_RS06270 | 1297212..1297442 | - | 231 | WP_043141621.1 | DNA polymerase III subunit theta | - |
| BVG95_RS06275 | 1297787..1298305 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| BVG95_RS06280 | 1298630..1299013 | + | 384 | WP_025302450.1 | CopC domain-containing protein YobA | - |
| BVG95_RS06285 | 1299016..1299897 | + | 882 | WP_043141616.1 | copper homeostasis membrane protein CopD | - |
| BVG95_RS06290 | 1299967..1300308 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1300406..1300546 | - | 141 | - | - | Antitoxin |
| - | 1300450..1300546 | + | 97 | - | - | Toxin |
| BVG95_RS06300 | 1301211..1301353 | + | 143 | Protein_1221 | DUF1367 family protein | - |
| BVG95_RS24300 | 1301593..1302402 | - | 810 | WP_145957795.1 | hypothetical protein | - |
| BVG95_RS06305 | 1303010..1303417 | + | 408 | WP_043141614.1 | hypothetical protein | - |
| BVG95_RS06310 | 1303553..1303903 | + | 351 | WP_043141612.1 | DUF4377 domain-containing protein | - |
| BVG95_RS06315 | 1304073..1305272 | + | 1200 | WP_025302456.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T70811 NZ_CP018915:1300450-1300546 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT70811 NZ_CP018915:c1300546-1300406 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
