Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 495928..496073 | Replicon | chromosome |
| Accession | NZ_CP018883 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain BR7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 495964..496066 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 495928..496073 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BU195_RS02360 | 491058..493118 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BU195_RS02365 | 493122..493781 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BU195_RS02370 | 493860..494090 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BU195_RS02375 | 494203..494577 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BU195_RS02380 | 494581..495450 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| BU195_RS02385 | 495467..495805 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 495928..496073 | - | 146 | - | - | Antitoxin |
| - | 495964..496066 | + | 103 | - | - | Toxin |
| BU195_RS27710 | 496442..496585 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BU195_RS02395 | 496690..497658 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| BU195_RS02400 | 497815..498468 | + | 654 | WP_032441330.1 | protein-serine/threonine phosphatase | - |
| BU195_RS02405 | 498465..498656 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BU195_RS02410 | 498754..498993 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BU195_RS02415 | 499109..500542 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70736 NZ_CP018883:495964-496066 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70736 NZ_CP018883:c496073-495928 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
