Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PumAB/upstrm_HI1419-dnstrm_HI1420 |
Location | 4836868..4837457 | Replicon | chromosome |
Accession | NZ_CP018846 | ||
Organism | Pseudomonas putida strain AA7 |
Toxin (Protein)
Gene name | PumA | Uniprot ID | - |
Locus tag | BUQ73_RS21995 | Protein ID | WP_079229659.1 |
Coordinates | 4837161..4837457 (-) | Length | 99 a.a. |
Antitoxin (Protein)
Gene name | PumB | Uniprot ID | - |
Locus tag | BUQ73_RS21990 | Protein ID | WP_079229658.1 |
Coordinates | 4836868..4837164 (-) | Length | 99 a.a. |
Genomic Context
Location: 4835659..4836306 (648 bp)
Type: Others
Protein ID: WP_027920290.1
Type: Others
Protein ID: WP_027920290.1
Location: 4836385..4836864 (480 bp)
Type: Others
Protein ID: WP_079229657.1
Type: Others
Protein ID: WP_079229657.1
Location: 4837683..4838573 (891 bp)
Type: Others
Protein ID: WP_079229660.1
Type: Others
Protein ID: WP_079229660.1
Location: 4832571..4832906 (336 bp)
Type: Others
Protein ID: WP_027920288.1
Type: Others
Protein ID: WP_027920288.1
Location: 4832949..4834064 (1116 bp)
Type: Others
Protein ID: WP_162144435.1
Type: Others
Protein ID: WP_162144435.1
Location: 4834079..4835128 (1050 bp)
Type: Others
Protein ID: WP_079229656.1
Type: Others
Protein ID: WP_079229656.1
Location: 4836868..4837164 (297 bp)
Type: Antitoxin
Protein ID: WP_079229658.1
Type: Antitoxin
Protein ID: WP_079229658.1
Location: 4837161..4837457 (297 bp)
Type: Toxin
Protein ID: WP_079229659.1
Type: Toxin
Protein ID: WP_079229659.1
Location: 4838604..4839371 (768 bp)
Type: Others
Protein ID: WP_079229661.1
Type: Others
Protein ID: WP_079229661.1
Location: 4839368..4840195 (828 bp)
Type: Others
Protein ID: WP_079229662.1
Type: Others
Protein ID: WP_079229662.1
Location: 4840189..4840986 (798 bp)
Type: Others
Protein ID: WP_079229663.1
Type: Others
Protein ID: WP_079229663.1
Location: 4840983..4841837 (855 bp)
Type: Others
Protein ID: WP_079229664.1
Type: Others
Protein ID: WP_079229664.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BUQ73_RS21960 | 4832571..4832906 | - | 336 | WP_027920288.1 | preprotein translocase subunit YajC | - |
BUQ73_RS21965 | 4832949..4834064 | - | 1116 | WP_162144435.1 | tRNA guanosine(34) transglycosylase Tgt | - |
BUQ73_RS21970 | 4834079..4835128 | - | 1050 | WP_079229656.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
BUQ73_RS21980 | 4835659..4836306 | + | 648 | WP_027920290.1 | trypsin-like peptidase domain-containing protein | - |
BUQ73_RS21985 | 4836385..4836864 | + | 480 | WP_079229657.1 | GNAT family N-acetyltransferase | - |
BUQ73_RS21990 | 4836868..4837164 | - | 297 | WP_079229658.1 | putative addiction module antidote protein | Antitoxin |
BUQ73_RS21995 | 4837161..4837457 | - | 297 | WP_079229659.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
BUQ73_RS22000 | 4837683..4838573 | + | 891 | WP_079229660.1 | effector protein | - |
BUQ73_RS22005 | 4838604..4839371 | - | 768 | WP_079229661.1 | phosphonate ABC transporter, permease protein PhnE | - |
BUQ73_RS22010 | 4839368..4840195 | - | 828 | WP_079229662.1 | ABC transporter permease | - |
BUQ73_RS22015 | 4840189..4840986 | - | 798 | WP_079229663.1 | ATP-binding cassette domain-containing protein | - |
BUQ73_RS22020 | 4840983..4841837 | - | 855 | WP_079229664.1 | putative selenate ABC transporter substrate-binding protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 10942.83 Da Isoelectric Point: 10.3193
>T70694 WP_079229659.1 NZ_CP018846:c4837457-4837161 [Pseudomonas putida]
MIYVVEQTKSFGLWLSALKDERAKFAIARRIERAFTGNLGDCKSLGDGLCELRINVSAGYRVYFIYRGKRVLLLLAGGDK
SSQSADILKAKQLAKELK
MIYVVEQTKSFGLWLSALKDERAKFAIARRIERAFTGNLGDCKSLGDGLCELRINVSAGYRVYFIYRGKRVLLLLAGGDK
SSQSADILKAKQLAKELK
Download Length: 297 bp
>T70694 NZ_CP018846:c4837457-4837161 [Pseudomonas putida]
ATGATCTATGTTGTCGAACAAACGAAGAGTTTTGGCTTGTGGTTGTCAGCCTTGAAAGATGAGCGTGCCAAATTCGCGAT
TGCCCGTAGGATCGAGCGAGCGTTTACGGGCAATCTTGGGGATTGCAAGTCACTTGGTGACGGCTTGTGTGAGCTTCGCA
TCAACGTATCTGCGGGCTACCGCGTCTACTTTATCTACCGAGGAAAGCGGGTGTTGCTGTTGCTCGCAGGGGGAGACAAA
TCCTCACAGAGCGCCGACATCCTAAAGGCCAAGCAACTAGCTAAGGAGCTGAAATGA
ATGATCTATGTTGTCGAACAAACGAAGAGTTTTGGCTTGTGGTTGTCAGCCTTGAAAGATGAGCGTGCCAAATTCGCGAT
TGCCCGTAGGATCGAGCGAGCGTTTACGGGCAATCTTGGGGATTGCAAGTCACTTGGTGACGGCTTGTGTGAGCTTCGCA
TCAACGTATCTGCGGGCTACCGCGTCTACTTTATCTACCGAGGAAAGCGGGTGTTGCTGTTGCTCGCAGGGGGAGACAAA
TCCTCACAGAGCGCCGACATCCTAAAGGCCAAGCAACTAGCTAAGGAGCTGAAATGA
Antitoxin
Download Length: 99 a.a. Molecular weight: 10551.18 Da Isoelectric Point: 5.6785
>AT70694 WP_079229658.1 NZ_CP018846:c4837164-4836868 [Pseudomonas putida]
MKEEIIPFDMAALLDSDEAVSEYLSQVLADGDTAEIIRALGHIARAKGMTQIAAQSGLGRESLYKALSPGAKPRFDTVLK
VIRALGVDLFAQPHVVSR
MKEEIIPFDMAALLDSDEAVSEYLSQVLADGDTAEIIRALGHIARAKGMTQIAAQSGLGRESLYKALSPGAKPRFDTVLK
VIRALGVDLFAQPHVVSR
Download Length: 297 bp
>AT70694 NZ_CP018846:c4837164-4836868 [Pseudomonas putida]
ATGAAAGAAGAAATTATTCCTTTCGACATGGCGGCATTGCTCGATAGCGATGAGGCGGTGAGTGAATACCTGAGTCAGGT
GCTGGCTGATGGGGATACCGCTGAAATCATTCGTGCGCTTGGTCATATAGCCCGTGCCAAGGGTATGACTCAGATTGCGG
CGCAAAGCGGGCTGGGTCGAGAGAGCCTCTACAAGGCGCTGAGCCCCGGAGCAAAGCCTCGCTTTGATACCGTGCTGAAG
GTCATACGTGCTCTTGGGGTAGACCTTTTCGCCCAGCCCCACGTTGTTTCACGCTGA
ATGAAAGAAGAAATTATTCCTTTCGACATGGCGGCATTGCTCGATAGCGATGAGGCGGTGAGTGAATACCTGAGTCAGGT
GCTGGCTGATGGGGATACCGCTGAAATCATTCGTGCGCTTGGTCATATAGCCCGTGCCAAGGGTATGACTCAGATTGCGG
CGCAAAGCGGGCTGGGTCGAGAGAGCCTCTACAAGGCGCTGAGCCCCGGAGCAAAGCCTCGCTTTGATACCGTGCTGAAG
GTCATACGTGCTCTTGGGGTAGACCTTTTCGCCCAGCCCCACGTTGTTTCACGCTGA