Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) PumAB/upstrm_HI1419-dnstrm_HI1420
Location 4836868..4837457 Replicon chromosome
Accession NZ_CP018846
Organism Pseudomonas putida strain AA7

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag BUQ73_RS21995 Protein ID WP_079229659.1
Coordinates 4837161..4837457 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name PumB Uniprot ID -
Locus tag BUQ73_RS21990 Protein ID WP_079229658.1
Coordinates 4836868..4837164 (-) Length 99 a.a.

Genomic Context


BUQ73_RS21980BUQ73_RS21985BUQ73_RS22000BUQ73_RS21960BUQ73_RS21965BUQ73_RS21970BUQ73_RS21990BUQ73_RS21995BUQ73_RS22005BUQ73_RS22010BUQ73_RS22015BUQ73_RS22020
Location: 4835659..4836306 (648 bp)
Type: Others
Protein ID: WP_027920290.1
Location: 4836385..4836864 (480 bp)
Type: Others
Protein ID: WP_079229657.1
Location: 4837683..4838573 (891 bp)
Type: Others
Protein ID: WP_079229660.1
Location: 4832571..4832906 (336 bp)
Type: Others
Protein ID: WP_027920288.1
Location: 4832949..4834064 (1116 bp)
Type: Others
Protein ID: WP_162144435.1
Location: 4834079..4835128 (1050 bp)
Type: Others
Protein ID: WP_079229656.1
Location: 4836868..4837164 (297 bp)
Type: Antitoxin
Protein ID: WP_079229658.1
Location: 4837161..4837457 (297 bp)
Type: Toxin
Protein ID: WP_079229659.1
Location: 4838604..4839371 (768 bp)
Type: Others
Protein ID: WP_079229661.1
Location: 4839368..4840195 (828 bp)
Type: Others
Protein ID: WP_079229662.1
Location: 4840189..4840986 (798 bp)
Type: Others
Protein ID: WP_079229663.1
Location: 4840983..4841837 (855 bp)
Type: Others
Protein ID: WP_079229664.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BUQ73_RS219604832571..4832906-336WP_027920288.1preprotein translocase subunit YajC-
BUQ73_RS219654832949..4834064-1116WP_162144435.1tRNA guanosine(34) transglycosylase Tgt-
BUQ73_RS219704834079..4835128-1050WP_079229656.1tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA-
BUQ73_RS219804835659..4836306+648WP_027920290.1trypsin-like peptidase domain-containing protein-
BUQ73_RS219854836385..4836864+480WP_079229657.1GNAT family N-acetyltransferase-
BUQ73_RS219904836868..4837164-297WP_079229658.1putative addiction module antidote proteinAntitoxin
BUQ73_RS219954837161..4837457-297WP_079229659.1type II toxin-antitoxin system RelE/ParE family toxinToxin
BUQ73_RS220004837683..4838573+891WP_079229660.1effector protein-
BUQ73_RS220054838604..4839371-768WP_079229661.1phosphonate ABC transporter, permease protein PhnE-
BUQ73_RS220104839368..4840195-828WP_079229662.1ABC transporter permease-
BUQ73_RS220154840189..4840986-798WP_079229663.1ATP-binding cassette domain-containing protein-
BUQ73_RS220204840983..4841837-855WP_079229664.1putative selenate ABC transporter substrate-binding protein-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(14-86)

Antitoxin

(6-92)


Sequences


Toxin        


Download         Length: 99 a.a.        Molecular weight: 10942.83 Da        Isoelectric Point: 10.3193

>T70694 WP_079229659.1 NZ_CP018846:c4837457-4837161 [Pseudomonas putida]
MIYVVEQTKSFGLWLSALKDERAKFAIARRIERAFTGNLGDCKSLGDGLCELRINVSAGYRVYFIYRGKRVLLLLAGGDK
SSQSADILKAKQLAKELK

Download         Length: 297 bp

>T70694 NZ_CP018846:c4837457-4837161 [Pseudomonas putida]
ATGATCTATGTTGTCGAACAAACGAAGAGTTTTGGCTTGTGGTTGTCAGCCTTGAAAGATGAGCGTGCCAAATTCGCGAT
TGCCCGTAGGATCGAGCGAGCGTTTACGGGCAATCTTGGGGATTGCAAGTCACTTGGTGACGGCTTGTGTGAGCTTCGCA
TCAACGTATCTGCGGGCTACCGCGTCTACTTTATCTACCGAGGAAAGCGGGTGTTGCTGTTGCTCGCAGGGGGAGACAAA
TCCTCACAGAGCGCCGACATCCTAAAGGCCAAGCAACTAGCTAAGGAGCTGAAATGA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 10551.18 Da        Isoelectric Point: 5.6785

>AT70694 WP_079229658.1 NZ_CP018846:c4837164-4836868 [Pseudomonas putida]
MKEEIIPFDMAALLDSDEAVSEYLSQVLADGDTAEIIRALGHIARAKGMTQIAAQSGLGRESLYKALSPGAKPRFDTVLK
VIRALGVDLFAQPHVVSR

Download         Length: 297 bp

>AT70694 NZ_CP018846:c4837164-4836868 [Pseudomonas putida]
ATGAAAGAAGAAATTATTCCTTTCGACATGGCGGCATTGCTCGATAGCGATGAGGCGGTGAGTGAATACCTGAGTCAGGT
GCTGGCTGATGGGGATACCGCTGAAATCATTCGTGCGCTTGGTCATATAGCCCGTGCCAAGGGTATGACTCAGATTGCGG
CGCAAAGCGGGCTGGGTCGAGAGAGCCTCTACAAGGCGCTGAGCCCCGGAGCAAAGCCTCGCTTTGATACCGTGCTGAAG
GTCATACGTGCTCTTGGGGTAGACCTTTTCGCCCAGCCCCACGTTGTTTCACGCTGA

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
No matching records found


Antitoxin

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Source
ID
Structure
No matching records found

References