Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2740336..2740481 | Replicon | chromosome |
| Accession | NZ_CP018816 | ||
| Organism | Klebsiella pneumoniae strain AR_0049 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2740372..2740474 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2740336..2740481 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM428_RS14275 | 2735466..2737526 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM428_RS14285 | 2737530..2738189 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM428_RS14290 | 2738268..2738498 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM428_RS14295 | 2738611..2738985 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM428_RS14300 | 2738989..2739858 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AM428_RS14305 | 2739875..2740213 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 2740336..2740481 | - | 146 | - | - | Antitoxin |
| - | 2740372..2740474 | + | 103 | - | - | Toxin |
| AM428_RS32445 | 2740848..2740991 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM428_RS14320 | 2741096..2742064 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM428_RS14325 | 2742221..2742874 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| AM428_RS14330 | 2742871..2743062 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM428_RS14335 | 2743160..2743399 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM428_RS14340 | 2743515..2744948 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70616 NZ_CP018816:2740372-2740474 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70616 NZ_CP018816:c2740481-2740336 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
