Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 815182..815381 | Replicon | chromosome |
| Accession | NZ_CP018814 | ||
| Organism | Enterobacter cloacae complex sp. AR_0002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 815275..815378 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 815182..815381 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM329_RS03990 (AM329_03850) | 811719..812381 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| AM329_RS03995 (AM329_03855) | 812406..813056 | - | 651 | WP_032609512.1 | carbon-nitrogen hydrolase family protein | - |
| AM329_RS04000 (AM329_03860) | 813168..813398 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AM329_RS04005 (AM329_03865) | 813536..813907 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| AM329_RS04010 (AM329_03870) | 813909..814778 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| AM329_RS04015 (AM329_03875) | 814795..815133 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 815182..815381 | - | 200 | - | - | Antitoxin |
| AM329_RS04020 (AM329_03880) | 815259..815456 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 815275..815378 | + | 104 | - | - | Toxin |
| AM329_RS04025 (AM329_03885) | 815502..816482 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| AM329_RS04030 (AM329_03890) | 816650..817294 | + | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| AM329_RS04035 (AM329_03895) | 817329..817568 | - | 240 | WP_003859885.1 | YebV family protein | - |
| AM329_RS04040 (AM329_03900) | 817675..819123 | - | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T70594 NZ_CP018814:815275-815378 [Enterobacter cloacae complex sp. AR_0002]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT70594 NZ_CP018814:c815381-815182 [Enterobacter cloacae complex sp. AR_0002]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
