Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1962147..1962418 Replicon chromosome
Accession NZ_CP018801
Organism Escherichia coli strain tolC-

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1962277..1962380 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1962147..1962418 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BTD92_RS10245 1958702..1959364 - 663 WP_000944256.1 exodeoxyribonuclease X -
BTD92_RS10250 1959388..1960044 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
BTD92_RS10255 1960146..1960376 - 231 WP_000916763.1 DNA polymerase III subunit theta -
BTD92_RS10260 1960515..1960889 + 375 WP_000168747.1 CopC domain-containing protein YobA -
BTD92_RS10265 1960893..1961765 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
BTD92_RS10270 1961778..1962119 + 342 WP_000976476.1 YebY family protein -
- 1962147..1962418 - 272 - - Antitoxin
- 1962277..1962380 + 104 - - Toxin
BTD92_RS10280 1962515..1963171 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
BTD92_RS10285 1963172..1963363 - 192 WP_000457842.1 YebW family protein -
BTD92_RS10290 1963468..1963704 - 237 WP_001295499.1 DUF1480 family protein -
BTD92_RS10295 1963822..1965261 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T70545 NZ_CP018801:1962277-1962380 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT70545 NZ_CP018801:c1962418-1962147 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References