Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 106064..106216 | Replicon | chromosome |
| Accession | NZ_CP018785 | ||
| Organism | Enterobacter ludwigii strain AA4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 106099..106202 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 106064..106216 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BUE86_RS00485 | 102548..103210 | - | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
| BUE86_RS00490 | 103235..103885 | - | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| BUE86_RS00495 | 103995..104225 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| BUE86_RS00500 | 104363..104734 | + | 372 | WP_079230850.1 | CopC domain-containing protein YobA | - |
| BUE86_RS00505 | 104736..105605 | + | 870 | WP_059306267.1 | copper homeostasis membrane protein CopD | - |
| BUE86_RS00510 | 105622..105960 | + | 339 | WP_079230851.1 | YebY family protein | - |
| - | 106064..106216 | - | 153 | - | - | Antitoxin |
| - | 106099..106202 | + | 104 | - | - | Toxin |
| BUE86_RS00515 | 106367..107308 | - | 942 | WP_020883410.1 | VirK/YbjX family protein | - |
| BUE86_RS00520 | 107476..108120 | + | 645 | WP_020883411.1 | protein-serine/threonine phosphatase | - |
| BUE86_RS00525 | 108155..108394 | - | 240 | WP_020883412.1 | YebV family protein | - |
| BUE86_RS00530 | 108500..109942 | - | 1443 | WP_079230852.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T70515 NZ_CP018785:106099-106202 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT70515 NZ_CP018785:c106216-106064 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
