Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 2524455..2525347 Replicon chromosome
Accession NZ_CP018758
Organism Pseudomonas psychrotolerans strain PRS08-11306

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag BJP27_RS11290 Protein ID WP_074528705.1
Coordinates 2524820..2525347 (+) Length 176 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag BJP27_RS11285 Protein ID WP_193557135.1
Coordinates 2524455..2524823 (+) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJP27_RS11275 2520409..2523366 + 2958 WP_081375592.1 autotransporter domain-containing protein -
BJP27_RS11280 2523390..2524244 - 855 WP_058766721.1 helix-turn-helix domain-containing protein -
BJP27_RS11285 2524455..2524823 + 369 WP_193557135.1 DNA-binding protein Antitoxin
BJP27_RS11290 2524820..2525347 + 528 WP_074528705.1 RES family NAD+ phosphorylase Toxin
BJP27_RS11295 2525446..2526225 - 780 WP_074528706.1 ABC transporter ATP-binding protein -
BJP27_RS11300 2526222..2527256 - 1035 WP_058784243.1 iron ABC transporter permease -
BJP27_RS11305 2527253..2528269 - 1017 WP_074528707.1 ABC transporter substrate-binding protein -
BJP27_RS11310 2528457..2530127 - 1671 WP_074528708.1 precorrin-3B C(17)-methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(11-169)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 176 a.a.        Molecular weight: 19686.34 Da        Isoelectric Point: 5.5408

>T70390 WP_074528705.1 NZ_CP018758:2524820-2525347 [Pseudomonas psychrotolerans]
MILVELPPATPLFRAHTPRWASQPLSGAGAALRGGRFNREGVAALYLSLDELTALREYQQTSAFLPPATLCSYSATLSAL
VDLRLLQRDATWDELWHDWREDWRHLRFEQHIEPPTWVLADLVRTQGHCGILFPSLVHPGGTNVVLYPDLLGEGESLRVL
DPDGRLPRDQSSWTP

Download         Length: 528 bp

>T70390 NZ_CP018758:2524820-2525347 [Pseudomonas psychrotolerans]
ATGATCCTGGTCGAGCTGCCACCGGCGACACCGCTGTTTCGCGCCCACACGCCACGCTGGGCCAGCCAGCCGCTGAGTGG
CGCGGGAGCCGCCTTGCGCGGTGGCCGCTTCAATCGTGAAGGCGTCGCGGCGCTCTATCTTTCACTCGATGAACTGACGG
CGCTGCGTGAATACCAGCAAACTTCGGCCTTTCTCCCCCCTGCGACCCTTTGCAGCTACAGCGCCACGCTGAGCGCTCTC
GTCGATCTGCGGCTCCTGCAACGGGATGCGACCTGGGACGAACTGTGGCACGACTGGCGCGAGGACTGGCGCCATCTGCG
CTTCGAGCAACACATCGAGCCCCCTACCTGGGTACTGGCCGATCTGGTCAGGACGCAGGGGCATTGCGGCATCCTGTTTC
CCAGCCTGGTGCATCCGGGCGGGACGAACGTCGTGCTCTATCCGGATCTGCTTGGCGAGGGCGAGTCGCTACGGGTATTG
GACCCCGACGGCCGGCTACCGCGCGACCAGTCCAGTTGGACGCCTTGA

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 13350.23 Da        Isoelectric Point: 8.7767

>AT70390 WP_193557135.1 NZ_CP018758:2524455-2524823 [Pseudomonas psychrotolerans]
MSVAFANVLETTREPGTSRFSVSGVANLLGLQQQDLADLARVHRNTLRTHPESPKLQTALRDVMRVISAATVIQPDPQRA
VFLVKNEPIAAFRHRTLLQLVQDGRTEDAIGYLESVSAGFVG

Download         Length: 369 bp

>AT70390 NZ_CP018758:2524455-2524823 [Pseudomonas psychrotolerans]
ATGTCCGTAGCCTTCGCCAACGTACTGGAAACCACGCGAGAGCCCGGTACCTCGCGATTCTCGGTGAGCGGTGTCGCTAA
CCTGCTCGGCTTGCAGCAACAGGATCTAGCCGACTTGGCGCGCGTCCATCGCAATACCCTGCGCACCCATCCTGAGTCGC
CCAAGCTGCAAACCGCCCTGCGTGACGTGATGCGCGTCATCTCGGCAGCCACCGTCATTCAACCCGACCCGCAACGCGCC
GTGTTTCTGGTCAAGAACGAGCCCATCGCGGCCTTTCGTCATCGGACGCTGTTGCAACTGGTACAGGATGGCCGTACTGA
GGATGCCATCGGTTACCTGGAGTCCGTCAGCGCGGGCTTCGTGGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References