Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2022268..2022413 | Replicon | chromosome |
| Accession | NZ_CP018695 | ||
| Organism | Klebsiella pneumoniae strain Kp_Goe_149832 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2022304..2022406 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2022268..2022413 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB751_RS10225 | 2017398..2019458 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BB751_RS10235 | 2019462..2020121 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BB751_RS10240 | 2020200..2020430 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BB751_RS10245 | 2020543..2020917 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| BB751_RS10250 | 2020921..2021790 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| BB751_RS10255 | 2021807..2022145 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2022268..2022413 | - | 146 | - | - | Antitoxin |
| - | 2022304..2022406 | + | 103 | - | - | Toxin |
| BB751_RS32165 | 2022782..2022925 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| BB751_RS10270 | 2023030..2023998 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BB751_RS10275 | 2024155..2024808 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| BB751_RS10280 | 2024805..2024996 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BB751_RS10285 | 2025094..2025333 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BB751_RS10290 | 2025449..2026882 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70252 NZ_CP018695:2022304-2022406 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70252 NZ_CP018695:c2022413-2022268 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
