Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1947324..1947469 | Replicon | chromosome |
| Accession | NZ_CP018692 | ||
| Organism | Klebsiella pneumoniae strain Kp_Goe_821588 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947360..1947462 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1947324..1947469 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB749_RS09925 | 1942454..1944514 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BB749_RS09935 | 1944518..1945177 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| BB749_RS09940 | 1945256..1945486 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BB749_RS09945 | 1945599..1945973 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BB749_RS09950 | 1945977..1946846 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| BB749_RS09955 | 1946863..1947201 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1947324..1947469 | - | 146 | - | - | Antitoxin |
| - | 1947360..1947462 | + | 103 | - | - | Toxin |
| BB749_RS29805 | 1947837..1947980 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BB749_RS09970 | 1948085..1949053 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BB749_RS09975 | 1949210..1949863 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BB749_RS09980 | 1949860..1950051 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BB749_RS09985 | 1950149..1950388 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BB749_RS09990 | 1950504..1951937 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70233 NZ_CP018692:1947360-1947462 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70233 NZ_CP018692:c1947469-1947324 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
