Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1265115..1265674 | Replicon | chromosome |
| Accession | NZ_CP018680 | ||
| Organism | Vibrio harveyi strain QT520 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | BG259_RS06005 | Protein ID | WP_038882476.1 |
| Coordinates | 1265396..1265674 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR21 |
| Locus tag | BG259_RS06000 | Protein ID | WP_005398409.1 |
| Coordinates | 1265115..1265399 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG259_RS05935 | 1260687..1260779 | - | 93 | WP_074050602.1 | DUF3265 domain-containing protein | - |
| BG259_RS05940 | 1260794..1261243 | - | 450 | WP_074050603.1 | C-GCAxxG-C-C family protein | - |
| BG259_RS05945 | 1261275..1261424 | - | 150 | WP_074050604.1 | DUF3265 domain-containing protein | - |
| BG259_RS05950 | 1261393..1261953 | - | 561 | WP_074050605.1 | hypothetical protein | - |
| BG259_RS05955 | 1262040..1262162 | - | 123 | WP_074050606.1 | DUF3265 domain-containing protein | - |
| BG259_RS05960 | 1262159..1262659 | - | 501 | WP_074050607.1 | hypothetical protein | - |
| BG259_RS05965 | 1262703..1262819 | - | 117 | WP_074050608.1 | DUF3265 domain-containing protein | - |
| BG259_RS05970 | 1262810..1263262 | - | 453 | WP_074051167.1 | hypothetical protein | - |
| BG259_RS05975 | 1263714..1263824 | - | 111 | WP_072615051.1 | DUF3265 domain-containing protein | - |
| BG259_RS05980 | 1263821..1264423 | - | 603 | WP_074050609.1 | hypothetical protein | - |
| BG259_RS28685 | 1264452..1264646 | - | 195 | WP_079400279.1 | DUF3265 domain-containing protein | - |
| BG259_RS05990 | 1264568..1264927 | - | 360 | WP_074050610.1 | hypothetical protein | - |
| BG259_RS05995 | 1264937..1265038 | - | 102 | Protein_1161 | DUF3265 domain-containing protein | - |
| BG259_RS06000 | 1265115..1265399 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| BG259_RS06005 | 1265396..1265674 | + | 279 | WP_038882476.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| BG259_RS06010 | 1266251..1266382 | - | 132 | WP_074050611.1 | DUF3265 domain-containing protein | - |
| BG259_RS06015 | 1266871..1266975 | - | 105 | WP_074050612.1 | DUF3265 domain-containing protein | - |
| BG259_RS06020 | 1266960..1267280 | - | 321 | WP_074050613.1 | hypothetical protein | - |
| BG259_RS06025 | 1267329..1267445 | - | 117 | WP_074050614.1 | DUF3265 domain-containing protein | - |
| BG259_RS06030 | 1267436..1267945 | - | 510 | WP_045390294.1 | ClbS/DfsB family four-helix bundle protein | - |
| BG259_RS06035 | 1268082..1268765 | - | 684 | WP_074050615.1 | hypothetical protein | - |
| BG259_RS06040 | 1268793..1268903 | - | 111 | WP_074050616.1 | DUF3265 domain-containing protein | - |
| BG259_RS06045 | 1268909..1269544 | - | 636 | WP_042764315.1 | hypothetical protein | - |
| BG259_RS06050 | 1269654..1270340 | - | 687 | WP_074050617.1 | hypothetical protein | - |
| BG259_RS06055 | 1270364..1270480 | - | 117 | WP_155771795.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1207992..1282830 | 74838 | |
| - | inside | Integron | - | - | 1209479..1282830 | 73351 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10905.60 Da Isoelectric Point: 4.3430
>T70203 WP_038882476.1 NZ_CP018680:1265396-1265674 [Vibrio harveyi]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGLQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGLQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T70203 NZ_CP018680:1265396-1265674 [Vibrio harveyi]
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAGATCTTCGAGTTTCTCTATGACTTCAACCCTGATGCGGC
AGAAAAAACTGACAACCTCATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCGCTAATGGGTCTGCAAAGAGATGGCA
TCCGCGGACGATTGCTCATTATTCCTGAGATTTCGATGATTGTCTCTTACTGGGTCGAGGGCGATATCATCAGAGTTATG
CGTGTACTCCACCAGAAACAAAAATTCCCTACGGATTGA
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAGATCTTCGAGTTTCTCTATGACTTCAACCCTGATGCGGC
AGAAAAAACTGACAACCTCATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCGCTAATGGGTCTGCAAAGAGATGGCA
TCCGCGGACGATTGCTCATTATTCCTGAGATTTCGATGATTGTCTCTTACTGGGTCGAGGGCGATATCATCAGAGTTATG
CGTGTACTCCACCAGAAACAAAAATTCCCTACGGATTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11069.40 Da Isoelectric Point: 9.2167
>AT70203 WP_005398409.1 NZ_CP018680:1265115-1265399 [Vibrio harveyi]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT70203 NZ_CP018680:1265115-1265399 [Vibrio harveyi]
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCTTAGCTCAACAAATGGCTGAGAGCCAAGGTCGAAC
TCTAAGTGATGCTTGCCGTGAACTTACTGAGCAACTCGCTGAACAACAAAGAAAAACATTATCTCACGATGCATGGCTAA
CTGAACAAGTAAACCTAGCATTTGAGAAGTTTGACTCAGGAAAATCCGTTTTCGTTGAACACCAAACTGCTAAGTCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGTAATCGAGGTAAGCAATGA
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCTTAGCTCAACAAATGGCTGAGAGCCAAGGTCGAAC
TCTAAGTGATGCTTGCCGTGAACTTACTGAGCAACTCGCTGAACAACAAAGAAAAACATTATCTCACGATGCATGGCTAA
CTGAACAAGTAAACCTAGCATTTGAGAAGTTTGACTCAGGAAAATCCGTTTTCGTTGAACACCAAACTGCTAAGTCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGTAATCGAGGTAAGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|