Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 1221741..1222288 | Replicon | chromosome |
| Accession | NZ_CP018680 | ||
| Organism | Vibrio harveyi strain QT520 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | BG259_RS05510 | Protein ID | WP_015296906.1 |
| Coordinates | 1221741..1222043 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A7Y3ZEQ4 |
| Locus tag | BG259_RS05515 | Protein ID | WP_015296907.1 |
| Coordinates | 1222031..1222288 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG259_RS05455 | 1217768..1217970 | - | 203 | Protein_1055 | hypothetical protein | - |
| BG259_RS05460 | 1217979..1218380 | - | 402 | WP_074050547.1 | type II toxin-antitoxin system YafO family toxin | - |
| BG259_RS28805 | 1218386..1218559 | - | 174 | WP_155771766.1 | hypothetical protein | - |
| BG259_RS05465 | 1218747..1219040 | - | 294 | WP_074050548.1 | hypothetical protein | - |
| BG259_RS05475 | 1219218..1219862 | - | 645 | WP_074050549.1 | peptidase E | - |
| BG259_RS05480 | 1219904..1220035 | - | 132 | WP_074050550.1 | DUF3265 domain-containing protein | - |
| BG259_RS05485 | 1220538..1220957 | - | 420 | WP_005536771.1 | hypothetical protein | - |
| BG259_RS05490 | 1220993..1221124 | - | 132 | WP_074050551.1 | DUF3265 domain-containing protein | - |
| BG259_RS28810 | 1221211..1221513 | + | 303 | WP_029790594.1 | hypothetical protein | - |
| BG259_RS05505 | 1221613..1221705 | - | 93 | WP_074050554.1 | DUF3265 domain-containing protein | - |
| BG259_RS05510 | 1221741..1222043 | - | 303 | WP_015296906.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| BG259_RS05515 | 1222031..1222288 | - | 258 | WP_015296907.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| BG259_RS05520 | 1222370..1222459 | - | 90 | WP_072829120.1 | DUF3265 domain-containing protein | - |
| BG259_RS05535 | 1222980..1223186 | - | 207 | WP_081384156.1 | DUF3265 domain-containing protein | - |
| BG259_RS28815 | 1223095..1223673 | - | 579 | WP_074050557.1 | hypothetical protein | - |
| BG259_RS05545 | 1223700..1223834 | - | 135 | WP_074050558.1 | DUF3265 domain-containing protein | - |
| BG259_RS05550 | 1223807..1224301 | - | 495 | WP_074050559.1 | DUF695 domain-containing protein | - |
| BG259_RS05555 | 1224330..1224476 | - | 147 | WP_074051159.1 | DUF3265 domain-containing protein | - |
| BG259_RS05560 | 1224437..1224790 | - | 354 | WP_074050560.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| BG259_RS05565 | 1224819..1224950 | - | 132 | WP_017420680.1 | DUF3265 domain-containing protein | - |
| BG259_RS05575 | 1225439..1225573 | - | 135 | WP_074050562.1 | DUF3265 domain-containing protein | - |
| BG259_RS05580 | 1225546..1226319 | - | 774 | WP_074050563.1 | NERD domain-containing protein | - |
| BG259_RS05585 | 1226457..1227104 | - | 648 | WP_074050564.1 | HAD family phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1207992..1282830 | 74838 | |
| - | inside | Integron | - | - | 1209479..1282830 | 73351 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11727.61 Da Isoelectric Point: 4.8838
>T70201 WP_015296906.1 NZ_CP018680:c1222043-1221741 [Vibrio harveyi]
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDDDKV
FILFVMRAERDLRKFLLSKQ
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDDDKV
FILFVMRAERDLRKFLLSKQ
Download Length: 303 bp
>T70201 NZ_CP018680:c1222043-1221741 [Vibrio harveyi]
ATGGCTGAAATAATCTGGACTGAACCAGCTTTATCTGACCTCAACGATATCGCTGAATACATCGCACTTGAAAATATCGT
AGCTGCAAAGCAGTTAGTGCAAACGATCTTCTCCAAAGTCGAACGCCTACAAACTTTCCCAGAGTCAGGTCGTATTCCAC
CCGAGCTAGAACATTTAAGTTATCGTGAAGTTGTCGTTAATCCATGTCGTGTTTTCTATAAACAAGACGATGACAAAGTG
TTTATTCTGTTTGTTATGCGTGCAGAGAGAGATTTGCGTAAGTTCCTGTTGAGTAAACAGTAA
ATGGCTGAAATAATCTGGACTGAACCAGCTTTATCTGACCTCAACGATATCGCTGAATACATCGCACTTGAAAATATCGT
AGCTGCAAAGCAGTTAGTGCAAACGATCTTCTCCAAAGTCGAACGCCTACAAACTTTCCCAGAGTCAGGTCGTATTCCAC
CCGAGCTAGAACATTTAAGTTATCGTGAAGTTGTCGTTAATCCATGTCGTGTTTTCTATAAACAAGACGATGACAAAGTG
TTTATTCTGTTTGTTATGCGTGCAGAGAGAGATTTGCGTAAGTTCCTGTTGAGTAAACAGTAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9638.16 Da Isoelectric Point: 6.7269
>AT70201 WP_015296907.1 NZ_CP018680:c1222288-1222031 [Vibrio harveyi]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKMVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKMVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT70201 NZ_CP018680:c1222288-1222031 [Vibrio harveyi]
ATGAAAGTAGAACTAGTTACATCACTCAAACGTCAAGCAACTAAGATCCTCGCCGATCTCCACGATACCAAAGAGCCAGT
GTTAATTACTGAGCATGGTAAGCCATCCGCTTATCTCGTTGATGTTGATGACTACGAGTTTATGCAAAATCGTTTAGCTA
TTCTTGAGGGTATTGCACGAGGTGAGCGTGCACTAGCTGACGGTAAAATGGTAAGCCATGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAATAA
ATGAAAGTAGAACTAGTTACATCACTCAAACGTCAAGCAACTAAGATCCTCGCCGATCTCCACGATACCAAAGAGCCAGT
GTTAATTACTGAGCATGGTAAGCCATCCGCTTATCTCGTTGATGTTGATGACTACGAGTTTATGCAAAATCGTTTAGCTA
TTCTTGAGGGTATTGCACGAGGTGAGCGTGCACTAGCTGACGGTAAAATGGTAAGCCATGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|