Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 748785..748930 | Replicon | chromosome |
| Accession | NZ_CP018676 | ||
| Organism | Klebsiella pneumoniae strain CAV1217 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 748792..748894 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 748785..748930 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGE86_RS05740 | 744317..745750 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AGE86_RS05745 | 745866..746105 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AGE86_RS05750 | 746203..746394 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AGE86_RS05755 | 746391..747044 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| AGE86_RS05760 | 747201..748169 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AGE86_RS27835 | 748274..748417 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 748785..748930 | + | 146 | - | - | Antitoxin |
| - | 748792..748894 | - | 103 | - | - | Toxin |
| AGE86_RS05770 | 749053..749391 | - | 339 | WP_016529031.1 | YebY family protein | - |
| AGE86_RS05775 | 749408..750277 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AGE86_RS05780 | 750281..750655 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AGE86_RS05785 | 750768..750998 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AGE86_RS05790 | 751077..751736 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| AGE86_RS05795 | 751740..753800 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70181 NZ_CP018676:c748894-748792 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70181 NZ_CP018676:748785-748930 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
