70157

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 936601..936746 Replicon chromosome
Accession NZ_CP018671
Organism Klebsiella pneumoniae strain CAV1042

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 936608..936710 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 936601..936746 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AGE78_RS07030 932132..933565 + 1434 WP_004148845.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AGE78_RS07035 933681..933920 + 240 WP_002911393.1 YebV family protein -
AGE78_RS07040 934018..934209 + 192 WP_002911395.1 YebW family protein -
AGE78_RS07045 934206..934859 - 654 WP_004180432.1 protein-serine/threonine phosphatase -
AGE78_RS07050 935016..935984 + 969 WP_004151446.1 VirK/YbjX family protein -
AGE78_RS30850 936089..936232 + 144 WP_002911398.1 Ecr family regulatory small membrane protein -
- 936601..936746 + 146 - - Antitoxin
- 936608..936710 - 103 - - Toxin
AGE78_RS07065 936869..937207 - 339 WP_002911404.1 YebY family protein -
AGE78_RS07070 937224..938093 - 870 WP_004175431.1 copper homeostasis membrane protein CopD -
AGE78_RS07075 938097..938471 - 375 WP_004151448.1 CopC domain-containing protein YobA -
AGE78_RS07080 938584..938814 + 231 WP_002911406.1 DNA polymerase III subunit theta -
AGE78_RS07085 938893..939552 + 660 WP_002911407.1 exodeoxyribonuclease X -
AGE78_RS07095 939556..941616 - 2061 WP_004151449.1 oligopeptidase B -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T70157 NZ_CP018671:c936710-936608 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT70157 NZ_CP018671:936601-936746 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References