Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 3323746..3324293 Replicon chromosome
Accession NZ_CP018475
Organism Xanthomonas perforans strain LH3

Toxin (Protein)


Gene name relE Uniprot ID A0A0G9C4Q2
Locus tag BJD13_RS16615 Protein ID WP_008574054.1
Coordinates 3323746..3324048 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q3BZM5
Locus tag BJD13_RS16620 Protein ID WP_008574056.1
Coordinates 3324036..3324293 (-) Length 86 a.a.

Genomic Context

BJD13_RS16585BJD13_RS16600BJD13_RS16605BJD13_RS16630BJD13_RS16635BJD13_RS16590BJD13_RS16595BJD13_RS16615BJD13_RS16620BJD13_RS16625
Location: 3319075..3319683 (609 bp)
Type: Others
Protein ID: WP_008574046.1
Location: 3321868..3322605 (738 bp)
Type: Others
Protein ID: WP_008574050.1
Location: 3322665..3323564 (900 bp)
Type: Others
Protein ID: WP_008574052.1
Location: 3325199..3327694 (2496 bp)
Type: Others
Protein ID: WP_008574058.1
Location: 3327691..3329148 (1458 bp)
Type: Others
Protein ID: WP_008574059.1
Location: 3319921..3320631 (711 bp)
Type: Others
Protein ID: WP_008574047.1
Location: 3320831..3321742 (912 bp)
Type: Others
Protein ID: WP_033478804.1
Location: 3323746..3324048 (303 bp)
Type: Toxin
Protein ID: WP_008574054.1
Location: 3324036..3324293 (258 bp)
Type: Antitoxin
Protein ID: WP_008574056.1
Location: 3324359..3325021 (663 bp)
Type: Others
Protein ID: WP_008574057.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BJD13_RS165853319075..3319683+609WP_008574046.1NAD(P)H-dependent oxidoreductase-
BJD13_RS165903319921..3320631-711WP_008574047.1hypothetical protein-
BJD13_RS165953320831..3321742-912WP_033478804.1LysR family transcriptional regulator-
BJD13_RS166003321868..3322605+738WP_008574050.1SDR family oxidoreductase-
BJD13_RS166053322665..3323564+900WP_008574052.1SDR family NAD(P)-dependent oxidoreductase-
BJD13_RS166153323746..3324048-303WP_008574054.1type II toxin-antitoxin system RelE/ParE family toxinToxin
BJD13_RS166203324036..3324293-258WP_008574056.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
BJD13_RS166253324359..3325021-663WP_008574057.1hemolysin III family protein-
BJD13_RS166303325199..3327694+2496WP_008574058.1DEAD/DEAH box helicase-
BJD13_RS166353327691..3329148+1458WP_008574059.1ribonuclease H-like domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--3313891..332429310402


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11522.33 Da        Isoelectric Point: 9.1267

>T70082 WP_008574054.1 NZ_CP018475:c3324048-3323746 [Xanthomonas perforans]
MAEIIWSVPALADLDAIADDIAIDNAPAAAAALVKWVLPQVERLIEHPDSGSRPQELQRSRYRQIVEPPCRVFYRVDGQR
IVLVHVMRWERALRRNRLSR

Download         Length: 303 bp

>T70082 NZ_CP018475:c3324048-3323746 [Xanthomonas perforans]
ATGGCTGAAATAATCTGGTCGGTGCCGGCATTGGCTGATCTGGACGCAATTGCCGACGACATCGCAATCGATAACGCACC
CGCTGCAGCGGCGGCGCTGGTCAAATGGGTGTTGCCGCAGGTCGAGCGATTGATTGAACACCCGGACAGCGGAAGCCGGC
CACAGGAACTCCAGCGCTCGCGCTATCGCCAGATTGTCGAACCACCTTGCCGCGTGTTCTACCGCGTGGATGGGCAGCGC
ATCGTGCTGGTGCACGTCATGCGGTGGGAGCGCGCGCTTCGCAGGAACCGTCTTTCACGCTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9686.18 Da        Isoelectric Point: 10.0780

>AT70082 WP_008574056.1 NZ_CP018475:c3324293-3324036 [Xanthomonas perforans]
MRTELVTTLKRQATEPLAAAERDKEPILITQHGLPRAYVVDVASDERMQQRIALLEGIARGEMAVAQGRTLRHEQAQQHM
ARWLK

Download         Length: 258 bp

>AT70082 NZ_CP018475:c3324293-3324036 [Xanthomonas perforans]
ATGCGCACCGAACTTGTCACCACGCTCAAGCGTCAGGCGACCGAACCCCTTGCAGCTGCAGAGCGCGACAAGGAGCCAAT
CCTGATCACACAGCACGGTTTACCCAGAGCCTATGTGGTGGATGTTGCCAGCGATGAGCGCATGCAGCAGCGCATTGCGC
TCCTGGAAGGAATCGCCCGTGGAGAAATGGCAGTCGCGCAAGGCCGTACGCTGCGCCATGAACAGGCACAGCAACACATG
GCGCGATGGCTGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A0G9C4Q2

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A3G2WGS6

References