Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911245..1911390 | Replicon | chromosome |
| Accession | NZ_CP018454 | ||
| Organism | Klebsiella pneumoniae strain SWU01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911252..1911354 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911245..1911390 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSL40_RS10300 | 1906777..1908210 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BSL40_RS10305 | 1908326..1908565 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BSL40_RS10310 | 1908663..1908854 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BSL40_RS10315 | 1908851..1909504 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BSL40_RS10320 | 1909661..1910629 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BSL40_RS31105 | 1910734..1910877 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1911245..1911390 | + | 146 | - | - | Antitoxin |
| - | 1911252..1911354 | - | 103 | - | - | Toxin |
| BSL40_RS10335 | 1911513..1911851 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BSL40_RS10340 | 1911868..1912737 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| BSL40_RS10345 | 1912741..1913115 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BSL40_RS10350 | 1913228..1913458 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BSL40_RS10355 | 1913537..1914196 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BSL40_RS10365 | 1914200..1916260 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70047 NZ_CP018454:c1911354-1911252 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70047 NZ_CP018454:1911245-1911390 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
