Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079570..2079715 | Replicon | chromosome |
| Accession | NZ_CP018447 | ||
| Organism | Klebsiella pneumoniae strain Kp_Goe_33208 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079606..2079708 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079570..2079715 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB747_RS10730 | 2074700..2076760 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BB747_RS10740 | 2076764..2077423 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BB747_RS10745 | 2077502..2077732 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BB747_RS10750 | 2077845..2078219 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BB747_RS10755 | 2078223..2079092 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| BB747_RS10760 | 2079109..2079447 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2079570..2079715 | - | 146 | - | - | Antitoxin |
| - | 2079606..2079708 | + | 103 | - | - | Toxin |
| BB747_RS30405 | 2080083..2080226 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BB747_RS10775 | 2080331..2081299 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BB747_RS10780 | 2081456..2082109 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| BB747_RS10785 | 2082106..2082297 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BB747_RS10790 | 2082395..2082634 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BB747_RS10795 | 2082750..2084183 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T70013 NZ_CP018447:2079606-2079708 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT70013 NZ_CP018447:c2079715-2079570 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
