Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3312612..3312757 | Replicon | chromosome |
| Accession | NZ_CP018437 | ||
| Organism | Klebsiella pneumoniae strain MNCRE53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3312619..3312721 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3312612..3312757 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTE50_RS19655 | 3308144..3309577 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BTE50_RS19660 | 3309693..3309932 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BTE50_RS19665 | 3310030..3310221 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BTE50_RS19670 | 3310218..3310871 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| BTE50_RS19675 | 3311028..3311996 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BTE50_RS32780 | 3312101..3312244 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3312612..3312757 | + | 146 | - | - | Antitoxin |
| - | 3312619..3312721 | - | 103 | - | - | Toxin |
| BTE50_RS19690 | 3312880..3313218 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BTE50_RS19695 | 3313235..3314104 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| BTE50_RS19700 | 3314108..3314482 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BTE50_RS19705 | 3314595..3314825 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BTE50_RS19710 | 3314904..3315563 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BTE50_RS19720 | 3315567..3317627 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69980 NZ_CP018437:c3312721-3312619 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT69980 NZ_CP018437:3312612-3312757 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
