Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3275952..3276097 | Replicon | chromosome |
| Accession | NZ_CP018428 | ||
| Organism | Klebsiella pneumoniae strain MNCRE78 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3275959..3276061 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3275952..3276097 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTE52_RS17470 | 3271484..3272917 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BTE52_RS17475 | 3273033..3273272 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BTE52_RS17480 | 3273370..3273561 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BTE52_RS17485 | 3273558..3274211 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| BTE52_RS17490 | 3274368..3275336 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BTE52_RS32535 | 3275441..3275584 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3275952..3276097 | + | 146 | - | - | Antitoxin |
| - | 3275959..3276061 | - | 103 | - | - | Toxin |
| BTE52_RS17505 | 3276220..3276558 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BTE52_RS17510 | 3276575..3277444 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| BTE52_RS17515 | 3277448..3277822 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BTE52_RS17520 | 3277935..3278165 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BTE52_RS17525 | 3278244..3278903 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BTE52_RS17535 | 3278907..3280967 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69960 NZ_CP018428:c3276061-3275959 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT69960 NZ_CP018428:3275952-3276097 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
