Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955895..1956040 | Replicon | chromosome |
| Accession | NZ_CP018364 | ||
| Organism | Klebsiella pneumoniae strain Kp_Goe_62629 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955931..1956033 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955895..1956040 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB790_RS10090 | 1951025..1953085 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BB790_RS10100 | 1953089..1953748 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BB790_RS10105 | 1953827..1954057 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BB790_RS10110 | 1954170..1954544 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BB790_RS10115 | 1954548..1955417 | + | 870 | WP_019725445.1 | copper homeostasis membrane protein CopD | - |
| BB790_RS10120 | 1955434..1955772 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1955895..1956040 | - | 146 | - | - | Antitoxin |
| - | 1955931..1956033 | + | 103 | - | - | Toxin |
| BB790_RS31490 | 1956408..1956551 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BB790_RS10135 | 1956656..1957624 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BB790_RS10140 | 1957781..1958434 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| BB790_RS10145 | 1958431..1958622 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BB790_RS10150 | 1958720..1958959 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BB790_RS10155 | 1959075..1960508 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69853 NZ_CP018364:1955931-1956033 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT69853 NZ_CP018364:c1956040-1955895 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
