Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 972116..972284 | Replicon | chromosome |
| Accession | NZ_CP018362 | ||
| Organism | Klebsiella oxytoca strain CAV1752 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 972123..972226 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 972116..972284 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGH21_RS07035 | 967390..967908 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| AGH21_RS07040 | 967927..968691 | + | 765 | WP_042945473.1 | molecular chaperone | - |
| AGH21_RS07045 | 968694..971024 | + | 2331 | WP_076752314.1 | fimbrial biogenesis outer membrane usher protein | - |
| AGH21_RS07050 | 971039..971998 | + | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| - | 972116..972284 | + | 169 | - | - | Antitoxin |
| - | 972123..972226 | - | 104 | - | - | Toxin |
| AGH21_RS07055 | 972383..972721 | - | 339 | WP_004103344.1 | YebY family protein | - |
| AGH21_RS07060 | 972738..973607 | - | 870 | WP_038424672.1 | copper homeostasis membrane protein CopD | - |
| AGH21_RS07065 | 973612..973986 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| AGH21_RS07070 | 974122..974352 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| AGH21_RS07075 | 974431..975090 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| AGH21_RS07080 | 975097..977157 | - | 2061 | WP_076752315.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T69827 NZ_CP018362:c972226-972123 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT69827 NZ_CP018362:972116-972284 [Klebsiella oxytoca]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
