Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2576691..2576836 | Replicon | chromosome |
| Accession | NZ_CP018356 | ||
| Organism | Klebsiella pneumoniae strain CAV1453 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2576698..2576800 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2576691..2576836 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGG69_RS15300 | 2572223..2573656 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AGG69_RS15305 | 2573772..2574011 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AGG69_RS15310 | 2574109..2574300 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AGG69_RS15315 | 2574297..2574950 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AGG69_RS15320 | 2575107..2576075 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AGG69_RS30385 | 2576180..2576323 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2576691..2576836 | + | 146 | - | - | Antitoxin |
| - | 2576698..2576800 | - | 103 | - | - | Toxin |
| AGG69_RS15335 | 2576959..2577297 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AGG69_RS15340 | 2577314..2578183 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AGG69_RS15345 | 2578187..2578561 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AGG69_RS15350 | 2578674..2578904 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AGG69_RS15355 | 2578983..2579642 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AGG69_RS15365 | 2579646..2581706 | - | 2061 | WP_032422099.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69805 NZ_CP018356:c2576800-2576698 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT69805 NZ_CP018356:2576691-2576836 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
