Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 213071..213216 | Replicon | chromosome |
| Accession | NZ_CP018352 | ||
| Organism | Klebsiella pneumoniae strain CAV1417 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 213107..213209 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 213071..213216 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGG42_RS02945 | 208201..210261 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AGG42_RS02950 | 210265..210924 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| AGG42_RS02955 | 211003..211233 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AGG42_RS02960 | 211346..211720 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AGG42_RS02965 | 211724..212593 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AGG42_RS02970 | 212610..212948 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 213071..213216 | - | 146 | - | - | Antitoxin |
| - | 213107..213209 | + | 103 | - | - | Toxin |
| AGG42_RS28715 | 213584..213727 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AGG42_RS02980 | 213832..214800 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AGG42_RS02985 | 214957..215610 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| AGG42_RS02990 | 215607..215798 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AGG42_RS02995 | 215896..216135 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AGG42_RS03000 | 216251..217684 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69781 NZ_CP018352:213107-213209 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT69781 NZ_CP018352:c213216-213071 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
