Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4259717..4259988 | Replicon | chromosome |
| Accession | NZ_CP018323 | ||
| Organism | Escherichia coli strain KSC9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4259755..4259858 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4259717..4259988 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS635_RS21955 | 4256874..4258313 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BS635_RS21960 | 4258431..4258667 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BS635_RS21965 | 4258772..4258963 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BS635_RS21970 | 4258964..4259620 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 4259717..4259988 | + | 272 | - | - | Antitoxin |
| - | 4259755..4259858 | - | 104 | - | - | Toxin |
| BS635_RS21975 | 4260016..4260357 | - | 342 | WP_000976492.1 | YebY family protein | - |
| BS635_RS21980 | 4260370..4261242 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| BS635_RS21985 | 4261246..4261620 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BS635_RS21990 | 4261759..4261989 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BS635_RS21995 | 4262091..4262747 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| BS635_RS22000 | 4262771..4263433 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T69738 NZ_CP018323:c4259858-4259755 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT69738 NZ_CP018323:4259717-4259988 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
