Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 764912..765056 | Replicon | chromosome |
| Accession | NZ_CP018307 | ||
| Organism | Klebsiella variicola strain X39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 764948..765050 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 764912..765056 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BC497_RS03660 | 760043..762103 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| BC497_RS03665 | 762107..762766 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| BC497_RS03670 | 762845..763075 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| BC497_RS03675 | 763189..763563 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| BC497_RS03680 | 763567..764435 | + | 869 | Protein_700 | copper homeostasis membrane protein CopD | - |
| BC497_RS03685 | 764452..764790 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 764912..765056 | - | 145 | - | - | Antitoxin |
| - | 764948..765050 | + | 103 | - | - | Toxin |
| BC497_RS31240 | 765435..765578 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| BC497_RS03695 | 765682..766650 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| BC497_RS03700 | 766806..767459 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| BC497_RS03705 | 767456..767647 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BC497_RS03710 | 767745..767984 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BC497_RS03715 | 768100..769533 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69687 NZ_CP018307:764948-765050 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT69687 NZ_CP018307:c765056-764912 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
