Detailed information of TA system TA069629

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1245356..1245924
• Replicon: chromosome
• Accession: NZ_CP018305
• Organism: Mycobacterium tuberculosis strain M0018684-2

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: BOM22_RS06145
• Protein ID: WP_003405865.1
• Coordinates: 1245550..1245924 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: BOM22_RS06140
• Protein ID: WP_003405863.1
• Coordinates: 1245356..1245553 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BOM22_RS06120	1241397..1242035	-	639	WP_003898730.1	lipid droplet-associated protein	-
BOM22_RS06125	1242125..1243132	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
BOM22_RS06130	1243149..1244132	-	984	WP_003898731.1	hypothetical protein	-
BOM22_RS06135	1244195..1245268	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
BOM22_RS06140	1245356..1245553	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
BOM22_RS06145	1245550..1245924	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
BOM22_RS06150	1246127..1246825	+	699	WP_003898733.1	hypothetical protein	-
BOM22_RS06155	1246943..1247128	+	186	WP_003901093.1	hypothetical protein	-
BOM22_RS06160	1247055..1247329	-	275	Protein_1164	hypothetical protein	-
BOM22_RS06165	1247572..1247895	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
BOM22_RS06170	1247910..1248620	-	711	WP_003911399.1	hypothetical protein	-
BOM22_RS21805	1248642..1248851	+	210	WP_003911400.1	hypothetical protein	-
BOM22_RS06180	1248803..1249510	-	708	Protein_1168	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T69629 WP_003405865.1 NZ_CP018305:1245550-1245924 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T69629 NZ_CP018305:1245550-1245924 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT69629 WP_003405863.1 NZ_CP018305:1245356-1245553 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT69629 NZ_CP018305:1245356-1245553 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07