Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 1859532..1860170 Replicon chromosome
Accession NZ_CP018250
Organism Escherichia coli strain 10671

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag BFL17_RS10075 Protein ID WP_000813794.1
Coordinates 1859994..1860170 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag BFL17_RS10070 Protein ID WP_001270286.1
Coordinates 1859532..1859948 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BFL17_RS10050 1854684..1855625 - 942 WP_001251315.1 ABC transporter permease -
BFL17_RS10055 1855626..1856639 - 1014 WP_000220402.1 ABC transporter ATP-binding protein -
BFL17_RS10060 1856657..1857802 - 1146 WP_000047432.1 ABC transporter substrate-binding protein -
BFL17_RS10065 1858047..1859453 - 1407 WP_000760654.1 PLP-dependent aminotransferase family protein -
BFL17_RS10070 1859532..1859948 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
BFL17_RS10075 1859994..1860170 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
BFL17_RS10080 1860392..1860622 + 231 WP_000494244.1 YncJ family protein -
BFL17_RS10085 1860714..1862675 - 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
BFL17_RS10090 1862748..1863284 - 537 WP_000429145.1 DNA-binding transcriptional regulator SutR -
BFL17_RS10095 1863337..1864548 + 1212 WP_071812960.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T69219 WP_000813794.1 NZ_CP018250:c1860170-1859994 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T69219 NZ_CP018250:c1860170-1859994 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT69219 WP_001270286.1 NZ_CP018250:c1859948-1859532 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT69219 NZ_CP018250:c1859948-1859532 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAAGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCAGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References