Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2470184..2470455 | Replicon | chromosome |
| Accession | NZ_CP018245 | ||
| Organism | Escherichia coli strain 472 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2470222..2470325 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2470184..2470455 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL23_RS13710 | 2467341..2468780 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFL23_RS13715 | 2468898..2469134 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BFL23_RS13720 | 2469239..2469430 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BFL23_RS13725 | 2469431..2470087 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2470184..2470455 | + | 272 | - | - | Antitoxin |
| - | 2470222..2470325 | - | 104 | - | - | Toxin |
| BFL23_RS13735 | 2470483..2470824 | - | 342 | WP_000976483.1 | YebY family protein | - |
| BFL23_RS13740 | 2470837..2471709 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| BFL23_RS13745 | 2471713..2472087 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| BFL23_RS13750 | 2472226..2472456 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BFL23_RS13755 | 2472558..2473214 | + | 657 | WP_072617024.1 | carbon-nitrogen hydrolase family protein | - |
| BFL23_RS13760 | 2473238..2473900 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T69147 NZ_CP018245:c2470325-2470222 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT69147 NZ_CP018245:2470184-2470455 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
