Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2374498..2374769 | Replicon | chromosome |
| Accession | NZ_CP018243 | ||
| Organism | Escherichia coli strain 350 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2374536..2374639 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2374498..2374769 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL21_RS12950 | 2371655..2373094 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFL21_RS12955 | 2373212..2373448 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BFL21_RS12960 | 2373553..2373744 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BFL21_RS12965 | 2373745..2374401 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2374498..2374769 | + | 272 | - | - | Antitoxin |
| - | 2374536..2374639 | - | 104 | - | - | Toxin |
| BFL21_RS12975 | 2374797..2375138 | - | 342 | WP_000976483.1 | YebY family protein | - |
| BFL21_RS12980 | 2375151..2376023 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| BFL21_RS12985 | 2376027..2376401 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| BFL21_RS12990 | 2376540..2376770 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BFL21_RS12995 | 2376872..2377528 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| BFL21_RS13000 | 2377552..2378214 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T69112 NZ_CP018243:c2374639-2374536 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT69112 NZ_CP018243:2374498-2374769 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
