Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2464932..2465203 | Replicon | chromosome |
| Accession | NZ_CP018241 | ||
| Organism | Escherichia coli strain 319 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2464970..2465073 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2464932..2465203 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL24_RS13460 | 2462089..2463528 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFL24_RS13465 | 2463646..2463882 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BFL24_RS13470 | 2463987..2464178 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BFL24_RS13475 | 2464179..2464835 | - | 657 | WP_032106700.1 | protein-serine/threonine phosphatase | - |
| - | 2464932..2465203 | + | 272 | - | - | Antitoxin |
| - | 2464970..2465073 | - | 104 | - | - | Toxin |
| BFL24_RS13485 | 2465231..2465572 | - | 342 | WP_000976483.1 | YebY family protein | - |
| BFL24_RS13490 | 2465585..2466457 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| BFL24_RS13495 | 2466461..2466835 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| BFL24_RS13500 | 2466974..2467204 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BFL24_RS13505 | 2467306..2467962 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| BFL24_RS13510 | 2467986..2468648 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T69069 NZ_CP018241:c2465073-2464970 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT69069 NZ_CP018241:2464932-2465203 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
