Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2409414..2409685 | Replicon | chromosome |
| Accession | NZ_CP018239 | ||
| Organism | Escherichia coli strain 272 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2409452..2409555 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2409414..2409685 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL22_RS13225 | 2406571..2408010 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFL22_RS13230 | 2408128..2408364 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BFL22_RS13235 | 2408469..2408660 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BFL22_RS13240 | 2408661..2409317 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2409414..2409685 | + | 272 | - | - | Antitoxin |
| - | 2409452..2409555 | - | 104 | - | - | Toxin |
| BFL22_RS13250 | 2409713..2410054 | - | 342 | WP_000976483.1 | YebY family protein | - |
| BFL22_RS13255 | 2410067..2410939 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| BFL22_RS13260 | 2410943..2411317 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| BFL22_RS13265 | 2411456..2411686 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BFL22_RS13270 | 2411788..2412444 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| BFL22_RS13275 | 2412468..2413130 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T69026 NZ_CP018239:c2409555-2409452 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT69026 NZ_CP018239:2409414-2409685 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
